4WXS Crystal Structure of the E396D SNP Variant of the Myocilin Olfactomedin Domain date
authors Donegan, R.K., Freeman, D.M., Lieberman, R.L.
compound source
symmetry
R_factor
R_Free 0.2098
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.90
ligand CA, GOL, NA, P6G, PG4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural basis for misfolding in myocilin-associated glaucoma., Donegan RK, Hill SE, Freeman DM, Nguyen E, Orwig SD, Turnage KC, Lieberman RL, Hum Mol Genet. 2015 Apr 15;24(8):2111-24. doi: 10.1093/hmg/ddu730. Epub 2014 Dec , 18. PMID:25524706
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (57 Kb) [Save to disk]
  • Biological Unit Coordinates (4wxs.pdb1.gz) 51 Kb
  • LPC: Ligand-Protein Contacts for 4WXS
  • CSU: Contacts of Structural Units for 4WXS
  • Structure Factors (557 Kb)
  • Retrieve 4WXS in mmCIF format [Save to disk]
  • Re-refined 4wxs structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4WXS in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4WXS
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4WXS, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4wxs] [4wxs_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4WXS: [OLF ] by SMART
    • Other resources with information on 4WXS
  • Community annotation for 4WXS at PDBWiki (http://pdbwiki.org)

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