4WZ3 Crystal structure of the complex between LubX/LegU2/Lpp2887 U-box 1 and Homo sapiens UBE2D2 date
authors Stogios, P.J., Quaile, A.T., Skarina, T., Nocek, B., Leo, R.Di., Yim, V., Savchenko, A., Joachimiak, A., MCSG, Midwest.Center.for.Structural.Genomics.
compound source
symmetry
R_factor
R_Free 0.2228
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.70
ligand MSE enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


B


Primary referenceMolecular Characterization of LubX: Functional Divergence of the U-Box Fold by Legionella pneumophila., Quaile AT, Urbanus ML, Stogios PJ, Nocek B, Skarina T, Ensminger AW, Savchenko A, Structure. 2015 Jun 18. pii: S0969-2126(15)00223-3. doi:, 10.1016/j.str.2015.05.020. PMID:26146184
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (118 Kb) [Save to disk]
  • Biological Unit Coordinates (4wz3.pdb1.gz) 112 Kb
  • LPC: Ligand-Protein Contacts for 4WZ3
  • CSU: Contacts of Structural Units for 4WZ3
  • Structure Factors (143 Kb)
  • Retrieve 4WZ3 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4WZ3 from S2C, [Save to disk]
  • Re-refined 4wz3 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4WZ3 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4WZ3
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4WZ3, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4wz3_B] [4wz3_A] [4wz3]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4WZ3: [UBCc] [Ubox ] by SMART
  • Other resources with information on 4WZ3
  • Community annotation for 4WZ3 at PDBWiki (http://pdbwiki.org)

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