4X3R Avi-GCPII structure in complex with FITC-conjugated GCPII-specific inhibitor date
authors Tykvart, J., Konvalinka, J.
compound source
symmetry
R_factor
R_Free 0.1804
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.86
ligand 686, BMA, CA, CL, MAN, NAG, ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceDesign of highly potent urea-based, exosite-binding inhibitors selective for glutamate carboxypeptidase II., Tykvart J, Schimer J, Jancarik A, Barinkova J, Navratil V, Starkova J, Sramkova K, Konvalinka J, Majer P, Sacha P, J Med Chem. 2015 May 28;58(10):4357-63. doi: 10.1021/acs.jmedchem.5b00278. Epub, 2015 May 7. PMID:25923815
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (251 Kb) [Save to disk]
  • Biological Unit Coordinates (4x3r.pdb1.gz) 481 Kb
  • LPC: Ligand-Protein Contacts for 4X3R
  • CSU: Contacts of Structural Units for 4X3R
  • Structure Factors (1622 Kb)
  • Retrieve 4X3R in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4X3R from S2C, [Save to disk]
  • Re-refined 4x3r structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4X3R in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4X3R
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4x3r_A] [4x3r]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4X3R
  • Community annotation for 4X3R at PDBWiki (http://pdbwiki.org)

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