4X7H Co-crystal Structure of PERK bound to N-{5-[(6,7-dimethoxyquinolin-4-yl)oxy]pyridin-2-yl}-1-methyl-3-oxo-2-phenyl-5-(pyridin-4-yl)-2,3-dihydro-1H-pyrazole-4-carboxamide inhibitor date
authors Shaffer, P.L., Bellon, S.F., Long, A.M., Chen, H.
compound source
symmetry
R_factor
R_Free 0.2136
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.00
ligand 3Z2, SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceDiscovery of 1H-Pyrazol-3(2H)-ones as Potent and Selective Inhibitors of Protein Kinase R-like Endoplasmic Reticulum Kinase (PERK)., Smith AL, Andrews KL, Beckmann H, Bellon SF, Beltran PJ, Booker S, Chen H, Chung YA, D'Angelo ND, Dao J, Dellamaggiore KR, Jaeckel P, Kendall R, Labitzke K, Long AM, Materna-Reichelt S, Mitchell P, Norman MH, Powers D, Rose M, Shaffer PL, Wu MM, Lipford JR, J Med Chem. 2015 Jan 14. PMID:25587754
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (98 Kb) [Save to disk]
  • Biological Unit Coordinates (4x7h.pdb1.gz) 92 Kb
  • LPC: Ligand-Protein Contacts for 4X7H
  • CSU: Contacts of Structural Units for 4X7H
  • Structure Factors (387 Kb)
  • Retrieve 4X7H in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4X7H from S2C, [Save to disk]
  • Re-refined 4x7h structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4X7H in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4X7H
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4X7H, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4x7h] [4x7h_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4X7H: [STYKc ] by SMART
  • Other resources with information on 4X7H
  • Community annotation for 4X7H at PDBWiki (http://pdbwiki.org)

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