4XNV The human P2Y1 receptor in complex with BPTU date
authors Zhang, D., Gao, Z., Jacobson, K., Han, G.W., Stevens, R., Zhao, Q., Wu, B., GPCR, GPCR.Network.
compound source
symmetry
R_factor
R_Free 0.2303
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.20
ligand 1PE, BUR, CLR, OLC, Y01, ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A
  • electron transfer activity


  • Primary referenceTwo disparate ligand-binding sites in the human P2Y1 receptor., Zhang D, Gao ZG, Zhang K, Kiselev E, Crane S, Wang J, Paoletta S, Yi C, Ma L, Zhang W, Han GW, Liu H, Cherezov V, Katritch V, Jiang H, Stevens RC, Jacobson KA, Zhao Q, Wu B, Nature. 2015 Apr 16;520(7547):317-21. doi: 10.1038/nature14287. Epub 2015 Mar 30. PMID:25822790
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (123 Kb) [Save to disk]
  • Biological Unit Coordinates (4xnv.pdb1.gz) 115 Kb
  • LPC: Ligand-Protein Contacts for 4XNV
  • CSU: Contacts of Structural Units for 4XNV
  • Structure Factors (210 Kb)
  • Retrieve 4XNV in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4XNV from S2C, [Save to disk]
  • Re-refined 4xnv structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4XNV in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4XNV
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4XNV, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4xnv] [4xnv_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4XNV
  • Community annotation for 4XNV at PDBWiki (http://pdbwiki.org)

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