4XS2 Irak4-inhibitor co-structure date
authors Fischmann, T.O.
compound source
symmetry
R_factor
R_Free 0.2850
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.73
ligand 42P, SEP, TPO enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceDiscovery and hit-to-lead optimization of 2,6-diaminopyrimidine inhibitors of interleukin-1 receptor-associated kinase 4., McElroy WT, Michael Seganish W, Jason Herr R, Harding J, Yang J, Yet L, Komanduri V, Prakash KC, Lavey B, Tulshian D, Greenlee WJ, Sondey C, Fischmann TO, Niu X, Bioorg Med Chem Lett. 2015 May 1;25(9):1836-41. doi: 10.1016/j.bmcl.2015.03.043. , Epub 2015 Mar 28. PMID:25870132
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (188 Kb) [Save to disk]
  • Biological Unit Coordinates (4xs2.pdb1.gz) 49 Kb
  • Biological Unit Coordinates (4xs2.pdb2.gz) 48 Kb
  • Biological Unit Coordinates (4xs2.pdb3.gz) 48 Kb
  • Biological Unit Coordinates (4xs2.pdb4.gz) 48 Kb
  • LPC: Ligand-Protein Contacts for 4XS2
  • CSU: Contacts of Structural Units for 4XS2
  • Structure Factors (990 Kb)
  • Retrieve 4XS2 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4XS2 from S2C, [Save to disk]
  • Re-refined 4xs2 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4XS2 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4XS2
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4XS2, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4xs2_D] [4xs2] [4xs2_B] [4xs2_C] [4xs2_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4XS2: [STYKc ] by SMART
    • Other resources with information on 4XS2
  • Community annotation for 4XS2 at PDBWiki (http://pdbwiki.org)

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science