4XT1 Structure of a nanobody-bound viral GPCR bound to human chemokine CX3CL1 date
authors Burg, J.S., Jude, K.M., Waghray, D., Garcia, K.C.
compound source
symmetry
R_factor
R_Free 0.2492
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.89
ligand CLR, OLC, PCA, SIN, UNL enzyme
Gene
Ontology
ChainFunctionProcessComponent
A
  • chemokine receptor activity


    • B


    Primary referenceStructural biology. Structural basis for chemokine recognition and activation of a viral G protein-coupled receptor., Burg JS, Ingram JR, Venkatakrishnan AJ, Jude KM, Dukkipati A, Feinberg EN, Angelini A, Waghray D, Dror RO, Ploegh HL, Garcia KC, Science. 2015 Mar 6;347(6226):1113-7. doi: 10.1126/science.aaa5026. PMID:25745166
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (170 Kb) [Save to disk]
  • Biological Unit Coordinates (4xt1.pdb1.gz) 161 Kb
  • LPC: Ligand-Protein Contacts for 4XT1
  • CSU: Contacts of Structural Units for 4XT1
  • Structure Factors (248 Kb)
  • Retrieve 4XT1 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4XT1 from S2C, [Save to disk]
  • Re-refined 4xt1 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4XT1 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4XT1
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4XT1, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4xt1_A] [4xt1] [4xt1_B] [4xt1_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4XT1: [IGv] [SCY ] by SMART
    • Other resources with information on 4XT1
  • Community annotation for 4XT1 at PDBWiki (http://pdbwiki.org)

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