4XYD Nitric oxide reductase from Roseobacter denitrificans (RdNOR) date
authors Crow, A.
compound source
symmetry
R_factor
R_Free 0.24348
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.85
ligand CA, CU, FE, HEC, HEM, UNL enzyme
Gene
Ontology
ChainFunctionProcessComponent
A
  • cytochrome-c oxidase activit...


    • B
  • electron transfer activity


    • Primary referenceStructure of the membrane-intrinsic nitric oxide reductase from Roseobacter denitrificans., Crow A, Matsuda Y, Arata H, Oubrie A, Biochemistry. 2016 May 17. PMID:27185533
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (104 Kb) [Save to disk]
  • Biological Unit Coordinates (4xyd.pdb1.gz) 98 Kb
  • LPC: Ligand-Protein Contacts for 4XYD
  • CSU: Contacts of Structural Units for 4XYD
  • Structure Factors (1419 Kb)
  • Retrieve 4XYD in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4XYD from S2C, [Save to disk]
  • Re-refined 4xyd structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4XYD in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4XYD
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4xyd_B] [4xyd_A] [4xyd]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4XYD
  • Community annotation for 4XYD at PDBWiki (http://pdbwiki.org)

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