4Y60
Structure of SOX18-HMG/PROX1-DNA
date
authors
Narasimhan, K., Prokoph, N., Kolatkar, P., Robinson, H., Jauch, R.
compound
source
symmetry
R_factor
R_Free
0.1989
crystal
cell
length a
length b
length c
angle alpha
angle beta
angle gamma
method
X-Ray Diffraction
resolution
1.75
Data retrieval
Asymmetric unit, PDB entry:
[header only]
[complete with coordinates]
(65 Kb)
[Save to disk]
Biological Unit Coordinates
(4y60.pdb1.gz) 58 Kb
CSU:
Contacts of Structural Units
for 4Y60
Structure Factors
(350 Kb)
Retrieve 4Y60 in
mmCIF
format
[Save to disk]
SEQRES to COORDINATES
correlation for
4Y60
from
S2C
,
[Save to disk]
Re-refined
4y60
structure from
PDB_REDO
, a databank with updated and optimised macromolecular X-ray diffraction structure models
View 4Y60 in 3D
Proteopedia
, because life has more than 2D.
On
Jmol
, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
On
FirstGlance
, an excellent tool for a guided tour on the structure components, by
E. Martz
.
Visual 3D analysis of 4Y60
Ramachandran
plot from
PDBSum
Structure-derived information
Electron Density
related parameters from
EDS
Electron Density Server, at Upsala
Dipole
moment, from
Dipole Server
at Weizmann Institute
Sequence-derived information
View one-letter amino acid or nucleotide sequence for each chain:
[4y60_C]
[4y60_A]
[4y60_B]
[4y60]
SWISS-PROT
database:
Domain
organization of by
SWISSPFAM
Domain
found in 4Y60:
[HMG ]
by
SMART
Other resources with information on 4Y60
Community annotation for
4Y60
at
PDBWiki
(http://pdbwiki.org)
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