4Y7R Crystal structure of WDR5 in complex with MYC MbIIIb peptide date
authors Sun, Q., Phan, J., Olejniczak, E.T., Thomas, L.R., Fesik, S.W., Tansey, W.P.
compound source
symmetry
R_factor
R_Free 0.1879
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.90
ligand EDO, TRS enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceInteraction with WDR5 Promotes Target Gene Recognition and Tumorigenesis by MYC., Thomas LR, Wang Q, Grieb BC, Phan J, Foshage AM, Sun Q, Olejniczak ET, Clark T, Dey S, Lorey S, Alicie B, Howard GC, Cawthon B, Ess KC, Eischen CM, Zhao Z, Fesik SW, Tansey WP, Mol Cell. 2015 Mar 25. pii: S1097-2765(15)00142-2. doi:, 10.1016/j.molcel.2015.02.028. PMID:25818646
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (110 Kb) [Save to disk]
  • Biological Unit Coordinates (4y7r.pdb1.gz) 104 Kb
  • LPC: Ligand-Protein Contacts for 4Y7R
  • CSU: Contacts of Structural Units for 4Y7R
  • Structure Factors (191 Kb)
  • Retrieve 4Y7R in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4Y7R from S2C, [Save to disk]
  • Re-refined 4y7r structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4Y7R in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4Y7R
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4Y7R, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4y7r] [4y7r_A] [4y7r_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4Y7R: [WD40 ] by SMART
  • Other resources with information on 4Y7R
  • Community annotation for 4Y7R at PDBWiki (http://pdbwiki.org)

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