4YHF Bruton's tyrosine kinase in complex with a t-butyl cyanoacrylamide inhibitor date
authors Paavilainen, V.O., McFarland, J.M., Taunton, J.
compound source
symmetry
R_factor
R_Free 0.2079
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.20
ligand 4C9, CL, EDO, NA, SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceProlonged and tunable residence time using reversible covalent kinase inhibitors., Bradshaw JM, McFarland JM, Paavilainen VO, Bisconte A, Tam D, Phan VT, Romanov S, Finkle D, Shu J, Patel V, Ton T, Li X, Loughhead DG, Nunn PA, Karr DE, Gerritsen ME, Funk JO, Owens TD, Verner E, Brameld KA, Hill RJ, Goldstein DM, Taunton J, Nat Chem Biol. 2015 May 25. doi: 10.1038/nchembio.1817. PMID:26006010
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (175 Kb) [Save to disk]
  • Biological Unit Coordinates (4yhf.pdb1.gz) 83 Kb
  • Biological Unit Coordinates (4yhf.pdb2.gz) 87 Kb
  • LPC: Ligand-Protein Contacts for 4YHF
  • CSU: Contacts of Structural Units for 4YHF
  • Structure Factors (250 Kb)
  • Retrieve 4YHF in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4YHF from S2C, [Save to disk]
  • Re-refined 4yhf structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4YHF in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4YHF
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4YHF, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4yhf_B] [4yhf] [4yhf_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4YHF: [TyrKc ] by SMART
  • Other resources with information on 4YHF
  • Community annotation for 4YHF at PDBWiki (http://pdbwiki.org)

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