4YJS THE KINASE DOMAIN OF HUMAN SPLEEN TYROSINE (SYK) IN COMPLEX WITH GTC000226 date
authors Somers, D.O.
compound source
symmetry
R_factor
R_Free 0.2257
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.22
ligand 4DN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceDiscovery of GSK143, a highly potent, selective and orally efficacious spleen tyrosine kinase inhibitor., Liddle J, Atkinson FL, Barker MD, Carter PS, Curtis NR, Davis RP, Douault C, Dickson MC, Elwes D, Garton NS, Gray M, Hayhow TG, Hobbs CI, Jones E, Leach S, Leavens K, Lewis HD, McCleary S, Neu M, Patel VK, Preston AG, Ramirez-Molina C, Shipley TJ, Skone PA, Smithers N, Somers DO, Walker AL, Watson RJ, Weingarten GG, Bioorg Med Chem Lett. 2011 Aug 12. PMID:21903390
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (98 Kb) [Save to disk]
  • Biological Unit Coordinates (4yjs.pdb1.gz) 93 Kb
  • LPC: Ligand-Protein Contacts for 4YJS
  • CSU: Contacts of Structural Units for 4YJS
  • Structure Factors (211 Kb)
  • Retrieve 4YJS in mmCIF format [Save to disk]
  • Re-refined 4yjs structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4YJS in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4YJS
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4yjs] [4yjs_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4YJS: [TyrKc ] by SMART
  • Other resources with information on 4YJS
  • Community annotation for 4YJS at PDBWiki (http://pdbwiki.org)

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