4YMK Crystal Structure of Stearoyl-Coenzyme A Desaturase 1 date
authors Bai, Y., McCoy, J.G., Rajashankar, K.R., Zhou, M.
compound source
symmetry
R_factor
R_Free 0.2353
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.60
ligand MPG, ST9, ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, D


Primary referenceX-ray structure of a mammalian stearoyl-CoA desaturase., Bai Y, McCoy JG, Levin EJ, Sobrado P, Rajashankar KR, Fox BG, Zhou M, Nature. 2015 Jun 22. doi: 10.1038/nature14549. PMID:26098370
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (226 Kb) [Save to disk]
  • Biological Unit Coordinates (4ymk.pdb1.gz) 112 Kb
  • Biological Unit Coordinates (4ymk.pdb2.gz) 110 Kb
  • LPC: Ligand-Protein Contacts for 4YMK
  • CSU: Contacts of Structural Units for 4YMK
  • Structure Factors (243 Kb)
  • Retrieve 4YMK in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4YMK from S2C, [Save to disk]
  • Re-refined 4ymk structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4YMK in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4YMK
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4ymk] [4ymk_D] [4ymk_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4YMK
  • Community annotation for 4YMK at PDBWiki (http://pdbwiki.org)

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