4YP8 Irak4-inhibitor co-structure date
authors Fischmann, T.O.
compound source
symmetry
R_factor
R_Free 0.2189
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.64
ligand 4GF, SEP, TPO enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referencePotent and Selective Amidopyrazole Inhibitors of IRAK4 That Are Efficacious in a Rodent Model of Inflammation., McElroy WT, Tan Z, Ho G, Paliwal S, Li G, Seganish WM, Tulshian D, Tata J, Fischmann TO, Sondey C, Bian H, Bober L, Jackson J, Garlisi CG, Devito K, Fossetta J, Lundell D, Niu X, ACS Med Chem Lett. 2015 May 12;6(6):677-82. doi: 10.1021/acsmedchemlett.5b00106. , eCollection 2015 Jun 11. PMID:26101573
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (191 Kb) [Save to disk]
  • Biological Unit Coordinates (4yp8.pdb1.gz) 49 Kb
  • Biological Unit Coordinates (4yp8.pdb2.gz) 48 Kb
  • Biological Unit Coordinates (4yp8.pdb3.gz) 49 Kb
  • Biological Unit Coordinates (4yp8.pdb4.gz) 49 Kb
  • LPC: Ligand-Protein Contacts for 4YP8
  • CSU: Contacts of Structural Units for 4YP8
  • Structure Factors (1128 Kb)
  • Retrieve 4YP8 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4YP8 from S2C, [Save to disk]
  • Re-refined 4yp8 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4YP8 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4YP8
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4YP8, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4yp8_B] [4yp8_C] [4yp8] [4yp8_D] [4yp8_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4YP8: [STYKc ] by SMART
    • Other resources with information on 4YP8
  • Community annotation for 4YP8 at PDBWiki (http://pdbwiki.org)

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science