4YUU Crystal structure of oxygen-evolving photosystem II from a red alga date
authors Ago, H., Shen, J.R.
compound source
symmetry
R_factor
R_Free 0.277700681274
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.77
Gene
Ontology
ChainFunctionProcessComponent
B1, b1, b2, B2


C1, C2, c1, c2


F2, f1, F1, f2


J2, j2, J1, j1


K2, k2, k1, K1


L1, l1, L2, l2


M1, m1, M2, m2


T1, T2, t2, t1


V1, v1, v2, V2


Z2, z2


a2, a1, A1, A2


d2, d1, D2, D1


e2, e1, E2, E1


h1, H1, H2, h2


i2, I1, i1, I2


o1, o2, O1, O2


q1, Q2


u2, U1, U2, u1


x1, X1, X2, x2


y1, Y1, Y2, y2


Primary referenceTowards structural elucidation of eukaryotic photosystem II: Purification, crystallization and preliminary X-ray diffraction analysis of photosystem II from a red alga., Adachi H, Umena Y, Enami I, Henmi T, Kamiya N, Shen JR, Biochim Biophys Acta. 2009 Feb;1787(2):121-8. doi: 10.1016/j.bbabio.2008.11.004. , Epub 2008 Nov 19. PMID:19059198
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1376 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 4YUU
  • Structure Factors (6608 Kb)
  • Retrieve 4YUU in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4YUU from S2C, [Save to disk]
  • View 4YUU in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4YUU
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4yuu_S2] [4yuu_b2] [4yuu_y1] [4yuu_Q2] [4yuu_O1] [4yuu_v2] [4yuu_S1] [4yuu_m2] [4yuu_I1] [4yuu_V2] [4yuu_Y2] [4yuu_s1] [4yuu_b1] [4yuu_w1] [4yuu_Y1] [4yuu_k1] [4yuu_D2] [4yuu_s2] [4yuu_d1] [4yuu_o2] [4yuu_C1] [4yuu_i1] [4yuu_t1] [4yuu_h2] [4yuu_X1] [4yuu_H1] [4yuu_u1] [4yuu_U1] [4yuu_f2] [4yuu_j2] [4yuu_U2] [4yuu_h1] [4yuu_f1] [4yuu_L1] [4yuu_B1] [4yuu_c1] [4yuu_j1] [4yuu_M2] [4yuu_E2] [4yuu_c2] [4yuu_o1] [4yuu_m1] [4yuu_x1] [4yuu_x2] [4yuu_e1] [4yuu_M1] [4yuu_V1] [4yuu_A2] [4yuu] [4yuu_a1] [4yuu_i2] [4yuu_z2] [4yuu_l1] [4yuu_H2] [4yuu_W2] [4yuu_w2] [4yuu_W1] [4yuu_y2] [4yuu_L2] [4yuu_J1] [4yuu_K1] [4yuu_t2] [4yuu_D1] [4yuu_O2] [4yuu_C2] [4yuu_X2] [4yuu_l2] [4yuu_T1] [4yuu_K2] [4yuu_E1] [4yuu_d2] [4yuu_k2] [4yuu_u2] [4yuu_a2] [4yuu_F1] [4yuu_A1] [4yuu_Z2] [4yuu_F2] [4yuu_e2] [4yuu_v1] [4yuu_T2] [4yuu_J2] [4yuu_q1] [4yuu_I2] [4yuu_B2]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4YUU
  • Community annotation for 4YUU at PDBWiki (http://pdbwiki.org)

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science