4Z6A Crystal Structure of a FVIIa-Trypsin Chimera (YT) in Complex with Soluble Tissue Factor date
authors Sorensen, A.B., Svensson, L.A., Gandhi, P.S.
compound source
symmetry
R_factor
R_Free 0.2405
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.25
ligand 0Z6, BGC, CA, CIT, FUC enzyme
Gene
Ontology
ChainFunctionProcessComponent
H


L


T


Primary referenceMolecular Basis of Enhanced Activity in Factor VIIa-Trypsin Variants Conveys Insights into Tissue Factor-Mediated Allosteric Regulation of Factor VIIa Activity., Sorensen AB, Madsen JJ, Svensson LA, Pedersen AA, Ostergaard H, Overgaard MT, Olsen OH, Gandhi PS, J Biol Chem. 2015 Dec 22. pii: jbc.M115.698613. PMID:26694616
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (267 Kb) [Save to disk]
  • Biological Unit Coordinates (4z6a.pdb1.gz) 257 Kb
  • LPC: Ligand-Protein Contacts for 4Z6A
  • CSU: Contacts of Structural Units for 4Z6A
  • Structure Factors (324 Kb)
  • Retrieve 4Z6A in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4Z6A from S2C, [Save to disk]
  • Re-refined 4z6a structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4Z6A in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4Z6A
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4z6a_T] [4z6a_L] [4z6a_H] [4z6a]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4Z6A: [EGF] [Tryp_SPc ] by SMART
  • Other resources with information on 4Z6A
  • Community annotation for 4Z6A at PDBWiki (http://pdbwiki.org)

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