4Z7N Integrin alphaIIbbeta3 in complex with AGDV peptide date
authors Lin, F.Y., Zhu, J., Springer, T.A.
compound source
symmetry
R_factor
R_Free 0.2527
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.60
ligand BMA, CA, CL, GOL, MAN, MN, NAG, SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, C


D, B


Primary referencebeta-subunit Binding is Sufficient for Ligands to open the Integrin alphaIIbbeta3 Headpiece., Lin FY, Zhu J, Eng ET, Hudson NE, Springer TA, J Biol Chem. 2015 Dec 2. pii: jbc.M115.705624. PMID:26631735
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1304 Kb) [Save to disk]
  • Biological Unit Coordinates (4z7n.pdb1.gz) 648 Kb
  • Biological Unit Coordinates (4z7n.pdb2.gz) 647 Kb
  • LPC: Ligand-Protein Contacts for 4Z7N
  • CSU: Contacts of Structural Units for 4Z7N
  • Structure Factors (666 Kb)
  • Retrieve 4Z7N in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4Z7N from S2C, [Save to disk]
  • Re-refined 4z7n structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4Z7N in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4Z7N
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4z7n_A] [4z7n_E] [4z7n_J] [4z7n_F] [4z7n_D] [4z7n_C] [4z7n] [4z7n_H] [4z7n_G] [4z7n_L] [4z7n_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4Z7N: [IG_like] [IGv] [INB] [Int_alpha] [PSI] [VWA ] by SMART
  • Other resources with information on 4Z7N
  • Community annotation for 4Z7N at PDBWiki (http://pdbwiki.org)

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