4ZGM Crystal structure of Semaglutide peptide backbone in complex with the GLP-1 receptor extracellular domain date
authors Reedtz-Runge, S.
compound source
symmetry
R_factor
R_Free 0.1928
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.80
ligand 32M enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


B


Primary referenceThe discovery of the once weekly glucagon like peptide 1 (GLP-1) analog semaglutide., Lau J, Bloch P, Schaffer L, Pettersson I, Spetzler J, Kofoed J, Madsen K, Knudsen LB, McGuire J, Steensgaard DB, Strauss HM, Gram DX, Knudsen SM, Nielsen FS, Thygesen P, Reedtz-Runge S, Kruse T, J Med Chem. 2015 Aug 26. PMID:26308095
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (49 Kb) [Save to disk]
  • Biological Unit Coordinates (4zgm.pdb1.gz) 44 Kb
  • LPC: Ligand-Protein Contacts for 4ZGM
  • CSU: Contacts of Structural Units for 4ZGM
  • Structure Factors (219 Kb)
  • Retrieve 4ZGM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4ZGM from S2C, [Save to disk]
  • Re-refined 4zgm structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4ZGM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4ZGM
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4zgm_B] [4zgm] [4zgm_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4ZGM: [GLUCA] [HormR ] by SMART
    • Other resources with information on 4ZGM
  • Community annotation for 4ZGM at PDBWiki (http://pdbwiki.org)

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