4ZRT PTP1BC215S bound to Nephrin peptide substrate date
authors Selner, N.G., Bell, C.E., Pei, D.
compound source
symmetry
R_factor
R_Free 0.20743
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.74
ligand CL, GOL, MG, PTR enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceDiverse levels of sequence selectivity and catalytic efficiency of protein-tyrosine phosphatases., Selner NG, Luechapanichkul R, Chen X, Neel BG, Zhang ZY, Knapp S, Bell CE, Pei D, Biochemistry. 2014 Jan 21;53(2):397-412. doi: 10.1021/bi401223r. Epub 2014 Jan 7. PMID:24359314
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (61 Kb) [Save to disk]
  • Biological Unit Coordinates (4zrt.pdb1.gz) 56 Kb
  • LPC: Ligand-Protein Contacts for 4ZRT
  • CSU: Contacts of Structural Units for 4ZRT
  • Structure Factors (691 Kb)
  • Retrieve 4ZRT in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4ZRT from S2C, [Save to disk]
  • Re-refined 4zrt structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4ZRT in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4ZRT
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4zrt_A] [4zrt_B] [4zrt]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4ZRT: [PTPc ] by SMART
  • Other resources with information on 4ZRT
  • Community annotation for 4ZRT at PDBWiki (http://pdbwiki.org)

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