4ZTJ Crystal Structure of the Prototype Foamy Virus Intasome with a 2-Pyridinone Aminal Inhibitor date
authors Klein, D.J., Patel, S.
compound source
symmetry
R_factor
R_Free 0.2211
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.67
ligand 4RT, GOL, MG, SO4, ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceDiscovery of 2-Pyridinone Aminals: A Prodrug Strategy to Advance a Second Generation of HIV-1 Integrase Strand Transfer Inhibitors., Raheem I, Walji A, Klein D, Sanders JM, Powell D, Abeywickrema P, Barbe G, Bennet A, Clas SD, Dubost D, Embrey M, Grobler J, Hafey M, Hartingh TJ, Hazuda DJ, Miller MD, Moore KP, Pajkovic N, Patel S, Rada V, Rearden P, Schreier JD, Sisko J, Steele TG, Truchon JF, Wai J, Xu M, Coleman PJ, J Med Chem. 2015 Sep 23. PMID:26397965
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (114 Kb) [Save to disk]
  • Biological Unit Coordinates (4ztj.pdb1.gz) 211 Kb
  • LPC: Ligand-Protein Contacts for 4ZTJ
  • CSU: Contacts of Structural Units for 4ZTJ
  • Structure Factors (1129 Kb)
  • Retrieve 4ZTJ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4ZTJ from S2C, [Save to disk]
  • Re-refined 4ztj structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4ZTJ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4ZTJ
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4ztj_B] [4ztj_A] [4ztj] [4ztj_D] [4ztj_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4ZTJ
  • Community annotation for 4ZTJ at PDBWiki (http://pdbwiki.org)

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