4ZZ0 Human GAR transformylase in complex with GAR and (S)-2-(8-(2-Amino-4-oxo-4,7-dihydro-3H-pyrrolo[2,3-d]pyrimidin-6-yl)octanamido)pentanedioic acid (AGF147) date
authors Deis, S.M., III, C.E.Dann.
compound source
symmetry
R_factor
R_Free 0.1852
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.65
ligand 3YE, GAR enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural and Enzymatic Analysis of Tumor-Targeted Antifolates That Inhibit Glycinamide Ribonucleotide Formyltransferase., Deis SM, Doshi A, Hou Z, Matherly LH, Gangjee A, Dann CE 3rd, Biochemistry. 2016 Aug 16;55(32):4574-82. doi: 10.1021/acs.biochem.6b00412. Epub , 2016 Aug 3. PMID:27439469
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (78 Kb) [Save to disk]
  • Biological Unit Coordinates (4zz0.pdb1.gz) 71 Kb
  • LPC: Ligand-Protein Contacts for 4ZZ0
  • CSU: Contacts of Structural Units for 4ZZ0
  • Structure Factors (363 Kb)
  • Retrieve 4ZZ0 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4ZZ0 from S2C, [Save to disk]
  • Re-refined 4zz0 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4ZZ0 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4ZZ0
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4zz0_A] [4zz0]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4ZZ0
  • Community annotation for 4ZZ0 at PDBWiki (http://pdbwiki.org)

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