5A09 Crystal Structure of human neutrophil elastase in complex with a dihydropyrimidone inhibitor date
authors vonNussbaum, F., Li, V.M.J., Allerheiligen, S., Anlauf, S., Baerfacker, L., Bechem, M., Delbeck, M., Fitzgerald, M.F., Gerisch, M., Gielen-Haertwig, H., Haning, H., Karthaus, D., Lang, D., Lustig, K., Meibom, D., Mittendorf, J., Rosentreter, U., Schaefer, M., Schaefer, S., Schamberger, J., Telan, L.A., Tersteegen, A.
compound source
symmetry
R_factor
R_Free 0.23944
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.81
ligand FUC, JJD, NAG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceFreezing the Bioactive Conformation to Boost Potency: The Identification of BAY 85-8501, a Selective and Potent Inhibitor of Human Neutrophil Elastase for Pulmonary Diseases., von Nussbaum F, Li VM, Allerheiligen S, Anlauf S, Barfacker L, Bechem M, Delbeck M, Fitzgerald MF, Gerisch M, Gielen-Haertwig H, Haning H, Karthaus D, Lang D, Lustig K, Meibom D, Mittendorf J, Rosentreter U, Schafer M, Schafer S, Schamberger J, Telan LA, Tersteegen A, ChemMedChem. 2015 Jul;10(7):1163-73. doi: 10.1002/cmdc.201500131. Epub 2015 Jun, 17. PMID:26083237
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (44 Kb) [Save to disk]
  • Biological Unit Coordinates (5a09.pdb1.gz) 39 Kb
  • LPC: Ligand-Protein Contacts for 5A09
  • CSU: Contacts of Structural Units for 5A09
  • Structure Factors (1007 Kb)
  • Retrieve 5A09 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5A09 from S2C, [Save to disk]
  • Re-refined 5a09 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5A09 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5A09
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5a09] [5a09_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 5A09: [Tryp_SPc ] by SMART
  • Other resources with information on 5A09
  • Community annotation for 5A09 at PDBWiki (http://pdbwiki.org)

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