5A0Q Cryo-EM reveals the conformation of a substrate analogue in the human 20S proteasome core date
authors daFonseca, P.C.A., Morris, E.P.
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 3.50
ligand KNM enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, O
  • positive regulation of NF-ka...

    • D, R


    F, T


    G, U


    J, X


    K, Y


    N, b


    P, B


    Q, C


    S, E


    V, W, H, I


    Z, L


    a, M


    Primary referenceCryo-EM reveals the conformation of a substrate analogue in the human 20S proteasome core., da Fonseca PC, Morris EP, Nat Commun. 2015 Jul 2;6:7573. doi: 10.1038/ncomms8573. PMID:26133119
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (758 Kb) [Save to disk]
  • Biological Unit Coordinates (5a0q.pdb1.gz) 745 Kb
  • LPC: Ligand-Protein Contacts for 5A0Q
  • CSU: Contacts of Structural Units for 5A0Q
  • Retrieve 5A0Q in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5A0Q from S2C, [Save to disk]
    • View 5A0Q in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5A0Q
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5a0q_N] [5a0q_C] [5a0q_A] [5a0q_W] [5a0q_a] [5a0q_Y] [5a0q_E] [5a0q_b] [5a0q_M] [5a0q_J] [5a0q_U] [5a0q_F] [5a0q_P] [5a0q_R] [5a0q_Z] [5a0q_X] [5a0q_Q] [5a0q_D] [5a0q_H] [5a0q_S] [5a0q_V] [5a0q_I] [5a0q_K] [5a0q_B] [5a0q_G] [5a0q_T] [5a0q_L] [5a0q_O] [5a0q]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 5A0Q: [Proteasome_A_N ] by SMART
    • Other resources with information on 5A0Q
  • Community annotation for 5A0Q at PDBWiki (http://pdbwiki.org)

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