5A2Q	Structure of the HCV IRES bound to the human ribosome	date
authors	Quade, N., Leiundgut, M., Boehringer, D., Heuvel, J.v.d., Ban, N.
compound		source
symmetry		R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution	3.90
ligand	MG, ZN	enzyme
Gene Ontology	Chain Function Process Component A virus receptor activity cytosolic small ribosomal su... B cytosolic small ribosomal su... C cytosolic small ribosomal su... D cytosolic small ribosomal su... E ribosome cytosolic small ribosomal su... F cytosolic small ribosomal su... G cytosolic small ribosomal su... H cytosolic small ribosomal su... I cytosolic small ribosomal su... J cytosolic small ribosomal su... K cytosolic small ribosomal su... L cytosolic small ribosomal su... M cytosolic small ribosomal su... N cytosolic small ribosomal su... O translation regulator activi... cytosolic small ribosomal su... P cytosolic small ribosomal su... Q cytosolic small ribosomal su... R cytosolic small ribosomal su... S small ribosomal subunit cytosolic small ribosomal su... T cytosolic small ribosomal su... U cytosolic small ribosomal su... V cytosolic small ribosomal su... W cytosolic small ribosomal su... X cytosolic small ribosomal su... Y small ribosomal subunit cytosolic small ribosomal su... Z small ribosomal subunit cytosolic small ribosomal su... a b cytosolic small ribosomal su... c d small ribosomal subunit cytosolic small ribosomal su... e small ribosomal subunit cytosolic small ribosomal su... f g protein tyrosine kinase inhi... h
Primary reference	Cryo-EM structure of Hepatitis C virus IRES bound to the human ribosome at 3.9-A resolution., Quade N, Boehringer D, Leibundgut M, van den Heuvel J, Ban N, Nat Commun. 2015 Jul 8;6:7646. doi: 10.1038/ncomms8646. PMID:26155016

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1472 Kb) [Save to disk] Biological Unit Coordinates (5a2q.pdb1.gz) 1454 Kb LPC: Ligand-Protein Contacts for 5A2Q CSU: Contacts of Structural Units for 5A2Q Retrieve 5A2Q in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5A2Q from S2C, [Save to disk]

View 5A2Q in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5A2Q

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5a2q_J] [5a2q_C] [5a2q] [5a2q_H] [5a2q_f] [5a2q_P] [5a2q_Y] [5a2q_K] [5a2q_G] [5a2q_Q] [5a2q_3] [5a2q_E] [5a2q_S] [5a2q_Z] [5a2q_X] [5a2q_T] [5a2q_d] [5a2q_r] [5a2q_D] [5a2q_b] [5a2q_L] [5a2q_g] [5a2q_N] [5a2q_W] [5a2q_A] [5a2q_R] [5a2q_F] [5a2q_M] [5a2q_V] [5a2q_I] [5a2q_w] [5a2q_h] [5a2q_e] [5a2q_B] [5a2q_a] [5a2q_c] [5a2q_2] [5a2q_O] [5a2q_U] SWISS-PROT database: Domain organization of by SWISSPFAM Domains found in 5A2Q: [KH] [Ribosomal_S10] [Ribosomal_S13_N] [Ribosomal_S15] [Ribosomal_S19e] [Ribosomal_S27] [Ribosomal_S3Ae] [Ribosomal_S4] [Ribosomal_S6e] [S4] [WD40 ] by SMART

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Community annotation for 5A2Q at PDBWiki (http://pdbwiki.org)

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