5A3U HIF prolyl hydroxylase 2 (PHD2/EGLN1) in complex with 6-(5-oxo-4-(1H- 1,2,3-triazol-1-yl)-2,5-dihydro-1H-pyrazol-1-yl)nicotinic acid date
authors Chowdhury, R., Gomez-Perez, V., Schofield, C.J.
compound source
symmetry
R_factor
R_Free 0.2266
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 3.30
ligand MN, R8J enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, C, B


Primary referencePotent and Selective Triazole-Based Inhibitors of the Hypoxia-Inducible Factor Prolyl-Hydroxylases with Activity in the Murine Brain., Chan MC, Atasoylu O, Hodson E, Tumber A, Leung IK, Chowdhury R, Gomez-Perez V, Demetriades M, Rydzik AM, Holt-Martyn J, Tian YM, Bishop T, Claridge TD, Kawamura A, Pugh CW, Ratcliffe PJ, Schofield CJ, PLoS One. 2015 Jul 6;10(7):e0132004. doi: 10.1371/journal.pone.0132004., eCollection 2015. PMID:26147748
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (206 Kb) [Save to disk]
  • Biological Unit Coordinates (5a3u.pdb1.gz) 388 Kb
  • LPC: Ligand-Protein Contacts for 5A3U
  • CSU: Contacts of Structural Units for 5A3U
  • Structure Factors (983 Kb)
  • Retrieve 5A3U in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5A3U from S2C, [Save to disk]
  • Re-refined 5a3u structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5A3U in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5A3U
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 5A3U, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5a3u_A] [5a3u_B] [5a3u_C] [5a3u]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 5A3U: [P4Hc ] by SMART
    • Other resources with information on 5A3U
  • Community annotation for 5A3U at PDBWiki (http://pdbwiki.org)

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