5A40 Crystal structure of a dual topology fluoride ion channel. date
authors Stockbridge, R.B., Kolmakova-Partensky, L., Shane, T., Koide, A., Koide, S., Miller, C., Newstead, S.
compound source
symmetry
R_factor
R_Free 0.2697
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 3.60
ligand HG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B
  • inorganic anion transmembran...


    • Primary referenceCrystal structures of a double-barrelled fluoride ion channel., Stockbridge RB, Kolmakova-Partensky L, Shane T, Koide A, Koide S, Miller C, Newstead S, Nature. 2015 Sep 24;525(7570):548-51. doi: 10.1038/nature14981. Epub 2015 Sep 7. PMID:26344196
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (139 Kb) [Save to disk]
  • Biological Unit Coordinates (5a40.pdb1.gz) 68 Kb
  • Biological Unit Coordinates (5a40.pdb2.gz) 68 Kb
  • LPC: Ligand-Protein Contacts for 5A40
  • CSU: Contacts of Structural Units for 5A40
  • Structure Factors (425 Kb)
  • Retrieve 5A40 in mmCIF format [Save to disk]
  • Re-refined 5a40 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5A40 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5A40
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5a40_G] [5a40_E] [5a40_A] [5a40_C] [5a40_H] [5a40_D] [5a40] [5a40_B] [5a40_F]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 5A40: [FN3 ] by SMART
    • Other resources with information on 5A40
  • Community annotation for 5A40 at PDBWiki (http://pdbwiki.org)

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