5A8Z	Crystal Structure of human neutrophil elastase in complex with a dihydropyrimidone inhibitor	date
authors	Nussbaum, F.von., Li, V.M., Meibom, D., Anlauf, S., Bechem, M., Delbeck, M., Gerisch, M., Harrenga, A., Karthaus, D., Lang, D., Lustig, K., Mittendorf, J., Schaefer, M., Schaefer, S., Schamberger, J.
compound		source
symmetry		R_factor R_Free 0.23644
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution	2.00
ligand	FUC, IUL, NAG	enzyme
Gene Ontology	Chain Function Process Component A
Primary reference	Potent and Selective Human Neutrophil Elastase Inhibitors with Novel Equatorial Ring Topology: in vivo Efficacy of the Polar Pyrimidopyridazine BAY-8040 in a Pulmonary Arterial Hypertension Rat Model., von Nussbaum F, Li VM, Meibom D, Anlauf S, Bechem M, Delbeck M, Gerisch M, Harrenga A, Karthaus D, Lang D, Lustig K, Mittendorf J, Schafer M, Schafer S, Schamberger J, ChemMedChem. 2016 Jan 19;11(2):199-206. doi: 10.1002/cmdc.201500269. Epub 2015, Sep 3. PMID:26333652

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (42 Kb) [Save to disk] Biological Unit Coordinates (5a8z.pdb1.gz) 36 Kb LPC: Ligand-Protein Contacts for 5A8Z CSU: Contacts of Structural Units for 5A8Z Structure Factors (174 Kb) Retrieve 5A8Z in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5A8Z from S2C, [Save to disk] Re-refined 5a8z structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5A8Z in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5A8Z

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5a8z_A] [5a8z] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 5A8Z: [Tryp_SPc ] by SMART

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