5AAB Structure of C1156Y,L1198F Mutant Human Anaplastic Lymphoma Kinase in Complex with Crizotinib date
authors McTigue, M., Deng, Y., Liu, W., Brooun, A., Stewart, A.
compound source
symmetry
R_factor
R_Free 0.246
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.20
ligand VGH enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceResensitization to Crizotinib by the Lorlatinib ALK Resistance Mutation L1198F., Shaw AT, Friboulet L, Leshchiner I, Gainor JF, Bergqvist S, Brooun A, Burke BJ, Deng YL, Liu W, Dardaei L, Frias RL, Schultz KR, Logan J, James LP, Smeal T, Timofeevski S, Katayama R, Iafrate AJ, Le L, McTigue M, Getz G, Johnson TW, Engelman JA, N Engl J Med. 2016 Jan 7;374(1):54-61. doi: 10.1056/NEJMoa1508887. Epub 2015 Dec , 23. PMID:26698910
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (57 Kb) [Save to disk]
  • Biological Unit Coordinates (5aab.pdb1.gz) 52 Kb
  • LPC: Ligand-Protein Contacts for 5AAB
  • CSU: Contacts of Structural Units for 5AAB
  • Structure Factors (133 Kb)
  • Retrieve 5AAB in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5AAB from S2C, [Save to disk]
  • Re-refined 5aab structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5AAB in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5AAB
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5aab_A] [5aab]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 5AAB: [TyrKc ] by SMART
  • Other resources with information on 5AAB
  • Community annotation for 5AAB at PDBWiki (http://pdbwiki.org)

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