5AC2 human aldehyde dehydrogenase 1A1 with duocarmycin analog date
authors Koch, M.F., Harteis, S., Blank, I.D., Pestel, G., Tietze, L.F., Ochsenfeld, C., Schneider, S., Sieber, S.A.
compound source
symmetry
R_factor
R_Free 0.25122
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.85
ligand K9P, TXE, YB enzyme
Gene
Ontology
ChainFunctionProcessComponent
A
  • GTPase activator activity


  • Primary referenceStructural, Biochemical, and Computational Studies Reveal the Mechanism of Selective Aldehyde Dehydrogenase 1A1 Inhibition by Cytotoxic Duocarmycin Analogues., Koch MF, Harteis S, Blank ID, Pestel G, Tietze LF, Ochsenfeld C, Schneider S, Sieber SA, Angew Chem Int Ed Engl. 2015 Sep 16. doi: 10.1002/anie.201505749. PMID:26373694
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (167 Kb) [Save to disk]
  • Biological Unit Coordinates (5ac2.pdb1.gz) 636 Kb
  • LPC: Ligand-Protein Contacts for 5AC2
  • CSU: Contacts of Structural Units for 5AC2
  • Structure Factors (653 Kb)
  • Retrieve 5AC2 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5AC2 from S2C, [Save to disk]
  • Re-refined 5ac2 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5AC2 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5AC2
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1l5ac2, region C:175-424 [Jmol] [rasmolscript] [script source]
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5ac2_A] [5ac2]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5AC2
  • Community annotation for 5AC2 at PDBWiki (http://pdbwiki.org)

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