5AIX Complex of human hematopoietic prostagandin D2 synthase (hH-PGDS) in complex with an active site inhibitor. date
authors Edfeldt, F., Evenas, J., Lepisto, M., Ward, A., Petersen, J., Wissler, L., Rohman, M., Sivars, U., Svensson, K., Perry, M., Feierberg, I., Zhou, X., Hansson, T., Narjes, F.
compound source
symmetry
R_factor
R_Free 0.34295
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.10
ligand GSH, KRX, MG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceIdentification of indole inhibitors of human hematopoietic prostaglandin D2 synthase (hH-PGDS)., Edfeldt F, Evenas J, Lepisto M, Ward A, Petersen J, Wissler L, Rohman M, Sivars U, Svensson K, Perry M, Feierberg I, Zhou XH, Hansson T, Narjes F, Bioorg Med Chem Lett. 2015 Jun 15;25(12):2496-500. doi:, 10.1016/j.bmcl.2015.04.065. Epub 2015 Apr 28. PMID:25978964
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (141 Kb) [Save to disk]
  • Biological Unit Coordinates (5aix.pdb1.gz) 69 Kb
  • Biological Unit Coordinates (5aix.pdb2.gz) 69 Kb
  • LPC: Ligand-Protein Contacts for 5AIX
  • CSU: Contacts of Structural Units for 5AIX
  • Structure Factors (863 Kb)
  • Retrieve 5AIX in mmCIF format [Save to disk]
  • Re-refined 5aix structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5AIX in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5AIX
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 5AIX, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5aix_C] [5aix_B] [5aix_A] [5aix] [5aix_D]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5AIX
  • Community annotation for 5AIX at PDBWiki (http://pdbwiki.org)

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