5AJI MscS D67R1 high resolution date
authors Naismith, J.H., Pliotas, C.
compound source
symmetry
R_factor
R_Free 0.26331
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.99
ligand D10, HEX, OCT, R1A enzyme
Gene
Ontology
ChainFunctionProcessComponent
F, A, D, C, G, E, B


Primary referenceThe role of lipids in mechanosensation., Pliotas C, Dahl AC, Rasmussen T, Mahendran KR, Smith TK, Marius P, Gault J, Banda T, Rasmussen A, Miller S, Robinson CV, Bayley H, Sansom MS, Booth IR, Naismith JH, Nat Struct Mol Biol. 2015 Nov 9. doi: 10.1038/nsmb.3120. PMID:26551077
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (597 Kb) [Save to disk]
  • Biological Unit Coordinates (5aji.pdb1.gz) 585 Kb
  • LPC: Ligand-Protein Contacts for 5AJI
  • CSU: Contacts of Structural Units for 5AJI
  • Structure Factors (706 Kb)
  • Retrieve 5AJI in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5AJI from S2C, [Save to disk]
  • Re-refined 5aji structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5AJI in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5AJI
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5aji_A] [5aji_F] [5aji_B] [5aji] [5aji_D] [5aji_G] [5aji_C] [5aji_E]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5AJI
  • Community annotation for 5AJI at PDBWiki (http://pdbwiki.org)

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