5AOL Cell Cycle date Sep 10, 2015
title Structure Of The P53 Cancer Mutant Y220c With Bound 3-Bromo- (Trifluoromethyl)Benzene-1,2-Diamine
authors A.C.Joerger, H.Harbrecht
compound source
Molecule: Cellular Tumor Antigen P53
Chain: A, B
Fragment: Dna-Binding Domain, Unp Residues 94-312
Synonym: Antigen Ny-Co-13, Phosphoprotein P53, Tumor Suppre P53;
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.139 R_Free 0.169
crystal
cell
length a length b length c angle alpha angle beta angle gamma
64.910 71.240 105.020 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.50 Å
ligand UFV, ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceExploiting Transient Protein States for the Design of Small-Molecule Stabilizers of Mutant p53., Joerger AC, Bauer MR, Wilcken R, Baud MG, Harbrecht H, Exner TE, Boeckler FM, Spencer J, Fersht AR, Structure. 2015 Dec 1;23(12):2246-55. doi: 10.1016/j.str.2015.10.016. PMID:26636255
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (146 Kb) [Save to disk]
  • Biological Unit Coordinates (5aol.pdb1.gz) 73 Kb
  • Biological Unit Coordinates (5aol.pdb2.gz) 70 Kb
  • LPC: Ligand-Protein Contacts for 5AOL
  • CSU: Contacts of Structural Units for 5AOL
  • Structure Factors (4492 Kb)
  • Retrieve 5AOL in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5AOL from S2C, [Save to disk]
  • Re-refined 5aol structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5AOL in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5AOL
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5aol_A] [5aol] [5aol_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5AOL
  • Community annotation for 5AOL at PDBWiki (http://pdbwiki.org)

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