5AP9 Hydrolase date Sep 15, 2015
title Controlled Lid-Opening In Thermomyces Lanuginosus Lipase - A For Activity And Binding
authors J.Skjold-Joergensen, J.Vind, O.V.Moroz, E.V.Blagova, V.K.Bhatia, A.Svendsen, K.S.Wilson, M.J.Bjerrum
compound source
Molecule: Lipase
Chain: A, B
Fragment: Unp Residues 23-291
Synonym: Triacylglycerol Lipase
Ec: 3.1.1.3
Engineered: Yes
Mutation: Yes
Organism_scientific: Thermomyces Lanuginosus
Organism_taxid: 5541
Expression_system: Aspergillus Oryzae
Expression_system_taxid: 5062
symmetry Space Group: P 43 21 2
R_factor 0.172 R_Free 0.197
crystal
cell
length a length b length c angle alpha angle beta angle gamma
90.478 90.478 160.455 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.80 Å
ligand GOL, NAG, PEG, SO4 enzyme Hydrolase E.C.3.1.1.3 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceControlled lid-opening in Thermomyces lanuginosus lipase- An engineered switch for studying lipase function., Skjold-Jorgensen J, Vind J, Moroz OV, Blagova E, Bhatia VK, Svendsen A, Wilson KS, Bjerrum MJ, Biochim Biophys Acta. 2017 Jan;1865(1):20-27. doi: 10.1016/j.bbapap.2016.09.016. , Epub 2016 Sep 28. PMID:27693248
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (181 Kb) [Save to disk]
  • Biological Unit Coordinates (5ap9.pdb1.gz) 89 Kb
  • Biological Unit Coordinates (5ap9.pdb2.gz) 88 Kb
  • LPC: Ligand-Protein Contacts for 5AP9
  • CSU: Contacts of Structural Units for 5AP9
  • Structure Factors (3267 Kb)
  • Retrieve 5AP9 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5AP9 from S2C, [Save to disk]
  • Re-refined 5ap9 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5AP9 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5AP9
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5ap9_A] [5ap9] [5ap9_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5AP9
  • Community annotation for 5AP9 at PDBWiki (http://pdbwiki.org)

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