5AQP	Chaperone	date	Sep 22, 2015
title	Fragment-Based Screening Of Hsp70 Sheds Light On The Functio Of Atp-Binding Site Residues
authors	A.M.Jones, I.M.Westwood, J.D.Osborne, T.P.Matthews, M.D.Cheesema M.G.Rowlands, F.Jeganathan, R.Burke, D.Lee, N.Kadi, M.Liu, M.Rich C.Mcandrew, N.Yahya, S.E.Dobson, K.Jones, P.Workman, I.Collins, R Montfort
compound		source
Molecule: Heat Shock Cognate 71 Kda Protein Chain: A, C, E Fragment: Nucleotide Binding Domain, Unp Residues 1-381 Synonym: Heat Shock 70 Kda Protein 8, Lipopolysaccharide-As Protein 1, Lap-1, Lps-Associated Protein 1; Ec: 3.6.3.51 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Expression_system_taxid: 511693 Expression_system_strain: Bl21 Expression_system_variant: Ai Expression_system_plasmid: Pgex-6p-1
Molecule: Bag Family Molecular Chaperone Regulator 1 Chain: B, D, F Fragment: Unp Residues 222-334 Synonym: Bag-1, Bcl-2-Associated Athanogene 1 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Expression_system_taxid: 511693 Expression_system_strain: Bl21 Expression_system_variant: Ai Expression_system_plasmid: Pgex-6p-1
symmetry	Space Group: C 1 2 1	R_factor 0.181 R_Free 0.209
crystal cell	length a length b length c angle alpha angle beta angle gamma 232.951 40.980 206.421 90.00 123.19 90.00
method	X-Ray Diffraction	resolution	2.08 Å
ligand	1LQ, DMS, GOL, TRS	enzyme	Hydrolase E.C.3.6.3.51 BRENDA
Gene Ontology	Chain Function Process Component F, D, B
Primary reference	A fragment-based approach applied to a highly flexible target: Insights and challenges towards the inhibition of HSP70 isoforms., Jones AM, Westwood IM, Osborne JD, Matthews TP, Cheeseman MD, Rowlands MG, Jeganathan F, Burke R, Lee D, Kadi N, Liu M, Richards M, McAndrew C, Yahya N, Dobson SE, Jones K, Workman P, Collins I, van Montfort RL, Sci Rep. 2016 Oct 6;6:34701. doi: 10.1038/srep34701. PMID:27708405

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (484 Kb) [Save to disk] Biological Unit Coordinates (5aqp.pdb1.gz) 163 Kb Biological Unit Coordinates (5aqp.pdb2.gz) 160 Kb Biological Unit Coordinates (5aqp.pdb3.gz) 161 Kb LPC: Ligand-Protein Contacts for 5AQP CSU: Contacts of Structural Units for 5AQP Structure Factors (1662 Kb) Retrieve 5AQP in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5AQP from S2C, [Save to disk] Re-refined 5aqp structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5AQP in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5AQP

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5aqp_D] [5aqp_B] [5aqp_C] [5aqp_F] [5aqp_E] [5aqp] [5aqp_A] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 5AQP: [BAG ] by SMART

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Community annotation for 5AQP at PDBWiki (http://pdbwiki.org)

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