5AX0 Proton Transport date Jul 10, 2015
title Crystal Structure Of The Cell-Free Synthesized Membrane Prot Acetabularia Rhodopsin I, At 1.52 Angstrom
authors M.Furuse, T.Hosaka, T.Kimura-Someya, S.Yokoyama, M.Shirouzu
compound source
Molecule: Rhodopsin I
Chain: A
Fragment: Unp Residues 1-237
Engineered: Yes
Organism_scientific: Acetabularia Acetabulum
Organism_common: Mermaid'S Wine Glass
Organism_taxid: 35845
Gene: Aopi
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: C 1 2 1
R_factor 0.176 R_Free 0.196
crystal
cell
length a length b length c angle alpha angle beta angle gamma
75.990 101.630 43.760 90.00 119.17 90.00
method X-Ray Diffractionresolution 1.52 Å
ligand C14, D10, D12, OLB, R16, RET enzyme
note 5AX0 supersedes 3WT9
Gene
Ontology
ChainFunctionProcessComponent
A
  • ion channel activity


  • Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (85 Kb) [Save to disk]
  • Biological Unit Coordinates (5ax0.pdb1.gz) 79 Kb
  • LPC: Ligand-Protein Contacts for 5AX0
  • CSU: Contacts of Structural Units for 5AX0
  • Structure Factors (699 Kb)
  • Retrieve 5AX0 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5AX0 from S2C, [Save to disk]
  • Re-refined 5ax0 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5AX0 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5AX0
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5ax0] [5ax0_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 5AX0: [Bac_rhodopsin ] by SMART
  • Other resources with information on 5AX0
  • Community annotation for 5AX0 at PDBWiki (http://pdbwiki.org)

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