5AZS Membrane Protein date Oct 21, 2015
title Crystal Structure Of A Membrane Protein From Pseudomonas Aer
authors R.Yonehara, E.Yamashita, A.Nakagawa
compound source
Molecule: Outer Membrane Protein Oprj
Chain: A, B, C
Engineered: Yes
Organism_scientific: Pseudomonas Aeruginosa (Strain Atcc 15 Pao1 1c Prs 101 Lmg 12228);
Organism_taxid: 208964
Strain: Atcc 15692 Pao1 1c Prs 101 Lmg 12228
Gene: Oprj, Pa4597
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.269 R_Free 0.307
crystal
cell
length a length b length c angle alpha angle beta angle gamma
86.329 92.388 252.765 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.10 Å
Gene
Ontology
ChainFunctionProcessComponent
A, C, B
  • xenobiotic transmembrane tra...


  • Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (423 Kb) [Save to disk]
  • Biological Unit Coordinates (5azs.pdb1.gz) 415 Kb
  • CSU: Contacts of Structural Units for 5AZS
  • Structure Factors (438 Kb)
  • Retrieve 5AZS in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5AZS from S2C, [Save to disk]
  • Re-refined 5azs structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5AZS in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5AZS
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5azs_B] [5azs_A] [5azs_C] [5azs]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5AZS
  • Community annotation for 5AZS at PDBWiki (http://pdbwiki.org)

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