5B2N Transport Protein date Jan 20, 2016
title Crystal Structure Of The Light-Driven Chloride Ion-Pumping R Clp, From Nonlabens Marinus
authors T.Hosaka, T.Kimura-Someya, M.Shirouzu
compound source
Molecule: Chloride Pumping Rhodopsin
Chain: A
Engineered: Yes
 Organism_scientific: Nonlabens Marinus S1-08
Organism_taxid: 1454201
Gene: Clr, Nms_1267
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: C 1 2 1
R_factor 0.176 R_Free 0.198
crystal
cell
length a length b length c angle alpha angle beta angle gamma
101.580 49.790 75.320 90.00 130.40 90.00
method X-Ray Diffractionresolution 1.58 Å
ligand CL, D10, D12, HEX, OCT, RET enzyme
Gene NMS
Gene
Ontology
ChainFunctionProcessComponent
A
  • ion channel activity


    • Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (92 Kb) [Save to disk]
  • Biological Unit Coordinates (5b2n.pdb1.gz) 87 Kb
  • LPC: Ligand-Protein Contacts for 5B2N
  • CSU: Contacts of Structural Units for 5B2N
  • Structure Factors (351 Kb)
  • Retrieve 5B2N in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5B2N from S2C, [Save to disk]
  • Re-refined 5b2n structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5B2N in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5B2N
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5b2n_A] [5b2n]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 5B2N: [Bac_rhodopsin ] by SMART
    • Other resources with information on 5B2N
  • Community annotation for 5B2N at PDBWiki (http://pdbwiki.org)

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