5B30	Oncoprotein	date	Feb 08, 2016
title	H-Ras Wt In Complex With Gppnhp (State 1) After Structural T By Humidity Control
authors	T.Kumasaka, N.Miyano, S.Baba, S.Matsumoto, T.Kataoka, F.Shima
compound		source
Molecule: Gtpase Hras Chain: A Synonym: H-Ras-1,Ha-Ras,Transforming Protein P21,C-H-Ras,P2 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Hras, Hras1 Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pgex-6p-1
symmetry	Space Group: H 3 2	R_factor 0.167 R_Free 0.196
crystal cell	length a length b length c angle alpha angle beta angle gamma 91.791 91.791 121.417 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	1.60 Å
ligand	CA, GNP, MG, NA	enzyme
Gene Ontology	Chain Function Process Component A
Primary reference	Molecular Mechanism for Conformational Dynamics of Ras.GTP Elucidated from In-Situ Structural Transition in Crystal., Matsumoto S, Miyano N, Baba S, Liao J, Kawamura T, Tsuda C, Takeda A, Yamamoto M, Kumasaka T, Kataoka T, Shima F, Sci Rep. 2016 May 16;6:25931. doi: 10.1038/srep25931. PMID:27180801

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (40 Kb) [Save to disk] Biological Unit Coordinates (5b30.pdb1.gz) 33 Kb LPC: Ligand-Protein Contacts for 5B30 CSU: Contacts of Structural Units for 5B30 Structure Factors (565 Kb) Retrieve 5B30 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5B30 from S2C, [Save to disk] Re-refined 5b30 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5B30 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5B30

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5b30] [5b30_A] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 5B30: [RAS ] by SMART

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