5B49	Hydrolase	date	Apr 03, 2016
title	Crystal Structure Of Lpxh With Manganese From Pseudomonas Ae
authors	C.Okada, H.Wakabayashi, M.Yao, I.Tanaka
compound		source
Molecule: Udp-2,3-Diacylglucosamine Hydrolase Chain: A, B Synonym: Udp-2,3-Diacylglucosamine Pyrophosphatase Lpxh, Ud Diacylglucosamine Diphosphatase; Ec: 3.6.1.54 Engineered: Yes		Organism_scientific: Pseudomonas Aeruginosa Pao1 Organism_taxid: 208964 Strain: Pao1 Gene: Lpxh, Pa1792 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_vector_type: Plasmid
symmetry	Space Group: P 1 21 1	R_factor 0.152 R_Free 0.177
crystal cell	length a length b length c angle alpha angle beta angle gamma 48.937 108.862 51.555 90.00 92.68 90.00
method	X-Ray Diffraction	resolution	1.65 Å
ligand	GOL, LP5, MN	enzyme	Hydrolase E.C.3.6.1.54 BRENDA
Gene Ontology	Chain Function Process Component A, B
Primary reference	Crystal structures of the UDP-diacylglucosamine pyrophosphohydrase LpxH from Pseudomonas aeruginosa., Okada C, Wakabayashi H, Kobayashi M, Shinoda A, Tanaka I, Yao M, Sci Rep. 2016 Sep 9;6:32822. doi: 10.1038/srep32822. PMID:27609419

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (174 Kb) [Save to disk] Biological Unit Coordinates (5b49.pdb1.gz) 83 Kb Biological Unit Coordinates (5b49.pdb2.gz) 87 Kb LPC: Ligand-Protein Contacts for 5B49 CSU: Contacts of Structural Units for 5B49 Structure Factors (1389 Kb) Retrieve 5B49 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5B49 from S2C, [Save to disk] Re-refined 5b49 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5B49 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5B49

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5b49_A] [5b49] [5b49_B] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 5B49

Community annotation for 5B49 at PDBWiki (http://pdbwiki.org)

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---