5B58 Metal Binding Protein date Apr 25, 2016
title Inward-Facing Conformation Of Abc Heme Importer Bhuuv In Com Periplasmic Heme Binding Protein Bhut From Burkholderia Cen
authors Y.Naoe, N.Nakamura, A.Doi, Y.Shiro, H.Sugimoto
compound source
Molecule: Putative Hemin Abc Transport System, Membrane Pro
Chain: A, B
Synonym: Heme Importer Transmembrane Subunit Bhuu
Engineered: Yes
Organism_scientific: Burkholderia Cenocepacia J2315
Organism_taxid: 216591
Strain: J2315
Gene: Hmuu, Bcam2629
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: C41(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet-19b

Molecule: Hemin Import Atp-Binding Protein Hmuv
Chain: C, D
Synonym: Heme Importer Atp-Binding Subunit Bhuv
Ec: 3.6.3.-
Engineered: Yes

Organism_scientific: Burkholderia Cenocepacia J2315
Organism_taxid: 216591
Strain: J2315
Gene: Hmuv, Bcam2630
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: C41(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet-19b

Molecule: Putative Hemin Transport System, Substrate-Bindin
Chain: T
Synonym: Periplasmic Heme-Binding Protein Bhut
Engineered: Yes

Organism_scientific: Burkholderia Cenocepacia J2315
Organism_taxid: 216591
Strain: J2315
Gene: Hmut, Bcam2628
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Rosetta2(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex6p-1
symmetry Space Group: P 21 21 21
R_factor 0.269 R_Free 0.310
crystal
cell
length a length b length c angle alpha angle beta angle gamma
69.016 99.751 253.496 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.21 Å
ligand
enzyme Hydrolase E.C.3.6.3 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B
  • transmembrane transporter ac...


  • D, C
  • heme-transporting ATPase act...


  • Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (440 Kb) [Save to disk]
  • Biological Unit Coordinates (5b58.pdb1.gz) 431 Kb
  • CSU: Contacts of Structural Units for 5B58
  • Structure Factors (522 Kb)
  • Retrieve 5B58 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5B58 from S2C, [Save to disk]
  • Re-refined 5b58 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5B58 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5B58
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5b58_D] [5b58_B] [5b58_T] [5b58_C] [5b58_A] [5b58]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 5B58: [AAA ] by SMART
  • Other resources with information on 5B58
  • Community annotation for 5B58 at PDBWiki (http://pdbwiki.org)

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