5BJT	Immune System Inhibitor	date	Oct 23, 2016
title	Crystal Structure Of Human Fcrn With A Peptide Inhibitor At Sites
authors	V.Nienaber, J.Badger
compound		source
Molecule: Igg Receptor Fcrn Large Subunit P51 Chain: A, C, E, G Fragment: Extracellular Domain (Unp Residues 24-290) Synonym: Fcrn, Igg Fc Fragment Receptor Transporter Alpha C Neonatal Fc Receptor; Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Fcgrt, Fcrn Expression_system: Cricetulus Griseus Expression_system_common: Chinese Hamster Expression_system_taxid: 10029
Molecule: Beta-2-Microglobulin Chain: B, D, F, H Fragment: Unp Residues 21-119 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: B2m, Cdabp0092, Hdcma22p Expression_system: Cricetulus Griseus Expression_system_common: Chinese Hamster Expression_system_taxid: 10029
Molecule: Peptide Inhibitor Chain: P, Q, R, S, T, U, V Engineered: Yes		Synthetic: Yes Organism_scientific: Synthetic Construct Organism_taxid: 32630
symmetry	Space Group: I 2 2 2	R_factor 0.252 R_Free 0.339
crystal cell	length a length b length c angle alpha angle beta angle gamma 104.917 176.152 245.515 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	3.20 Å
Gene Ontology	Chain Function Process Component H, F, D, B cellular response to iron io...
Primary reference	Hepatic FcRn regulates albumin homeostasis and susceptibility to liver injury., Pyzik M, Rath T, Kuo TT, Win S, Baker K, Hubbard JJ, Grenha R, Gandhi A, Kramer TD, Mezo AR, Taylor ZS, McDonnell K, Nienaber V, Andersen JT, Mizoguchi A, Blumberg L, Purohit S, Jones SD, Christianson G, Lencer WI, Sandlie I, Kaplowitz N, Roopenian DC, Blumberg RS, Proc Natl Acad Sci U S A. 2017 Mar 22. pii: 201618291. doi:, 10.1073/pnas.1618291114. PMID:28330995

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (235 Kb) [Save to disk] Biological Unit Coordinates (5bjt.pdb1.gz) 59 Kb Biological Unit Coordinates (5bjt.pdb2.gz) 57 Kb Biological Unit Coordinates (5bjt.pdb3.gz) 58 Kb Biological Unit Coordinates (5bjt.pdb4.gz) 52 Kb Biological Unit Coordinates (5bjt.pdb5.gz) 7 Kb Biological Unit Coordinates (5bjt.pdb6.gz) 7 Kb Biological Unit Coordinates (5bjt.pdb7.gz) 7 Kb Biological Unit Coordinates (5bjt.pdb8.gz) 6 Kb Biological Unit Coordinates (5bjt.pdb9.gz) 6 Kb CSU: Contacts of Structural Units for 5BJT Structure Factors (408 Kb) Retrieve 5BJT in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5BJT from S2C, [Save to disk] Re-refined 5bjt structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5BJT in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5BJT

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5bjt_D] [5bjt_G] [5bjt_C] [5bjt_E] [5bjt_T] [5bjt_P] [5bjt_U] [5bjt] [5bjt_A] [5bjt_Q] [5bjt_R] [5bjt_H] [5bjt_S] [5bjt_F] [5bjt_B] [5bjt_V] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 5BJT

Community annotation for 5BJT at PDBWiki (http://pdbwiki.org)

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---