5BMU Translation Ligase date May 23, 2015
title The Crystal Structure Of The Gst-Like Domains Complex Of Aim Mutant C92sc105sc123s
authors H.J.Cho, B.S.Kang
compound source
Molecule: Eukaryotic Translation Elongation Factor 1 Epsilo
Chain: A, C, E, G
Fragment: Unp Residues 1-169
Synonym: Aimp3,Aminoacyl Trna Synthetase Complex-Interactin Multifunctional Protein 3,Elongation Factor P18,Multisyntha Auxiliary Component P18;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Eef1e1, Aimp3, P18
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Glutamate--Trna Ligase
Chain: B, D, F, H
Fragment: Eprs Gst-Like Domain, Unp Residues 1-175
Ec: 6.1.1.17
Engineered: Yes
Mutation: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Eprs
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 31
R_factor 0.138 R_Free 0.170
crystal
cell
length a length b length c angle alpha angle beta angle gamma
92.063 92.063 185.948 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.60 Å
ligand
enzyme Ligase E.C.6.1.1.17 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, C, G, E


Primary referenceAssembly of Multi-tRNA Synthetase Complex via Heterotetrameric Glutathione Transferase-Homology Domains., Cho HY, Maeng SJ, Cho HJ, Choi YS, Chung JM, Lee S, Kim HK, Kim JH, Eom CY, Kim YG, Guo M, Jung HS, Kang BS, Kim S, J Biol Chem. 2015 Oct 15. pii: jbc.M115.690867. PMID:26472928
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (211 Kb) [Save to disk]
  • Biological Unit Coordinates (5bmu.pdb1.gz) 54 Kb
  • Biological Unit Coordinates (5bmu.pdb2.gz) 53 Kb
  • Biological Unit Coordinates (5bmu.pdb3.gz) 54 Kb
  • Biological Unit Coordinates (5bmu.pdb4.gz) 54 Kb
  • CSU: Contacts of Structural Units for 5BMU
  • Structure Factors (1021 Kb)
  • Retrieve 5BMU in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5BMU from S2C, [Save to disk]
  • Re-refined 5bmu structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5BMU in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5BMU
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5bmu_D] [5bmu_H] [5bmu_A] [5bmu_E] [5bmu_B] [5bmu] [5bmu_C] [5bmu_F] [5bmu_G]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5BMU
  • Community annotation for 5BMU at PDBWiki (http://pdbwiki.org)

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science