5BNH Dna Binding Protein Dna date May 26, 2015
title Crystal Structure Of The Hltf Hiran Domain With A Ssdna Frag
authors D.Neculai, J.R.Walker, J.Weigelt, C.Bountra, A.M.Edwards, C.H.Arr S.Dhe-Paganon
compound source
Molecule: Dna (5'-D((Gd)Pgptpg)-3')
Chain: B
Engineered: Yes
 Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630

Molecule: Dna (5'-D((Td)Ptpg)-3')
Chain: C
Engineered: Yes
Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630

Molecule: Helicase-Like Transcription Factor
Chain: A, D
Fragment: Unp Residues 55-175
Synonym: Dna-Binding Proteinplasminogen Activator Inhibito Regulator,Hip116,Ring Finger Protein 80,Swisnf-Related Mat Associated Actin-Dependent Regulator Of Chromatin Subfamily 3,Sucrose Nonfermenting Protein 2-Like 3;
Ec: 3.6.4.-,6.3.2.-
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Hltf
Expression_system: Enterobacteria Phage L1
Expression_system_taxid: 268588
symmetry Space Group: P 21 21 21
R_factor 0.165 R_Free 0.214
crystal
cell
length a length b length c angle alpha angle beta angle gamma
48.469 50.117 102.763 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.70 Å
ligand ACT, NA, PO4 enzyme Hydrolase E.C.3.6.4 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, D


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (88 Kb) [Save to disk]
  • Biological Unit Coordinates (5bnh.pdb1.gz) 82 Kb
  • LPC: Ligand-Protein Contacts for 5BNH
  • CSU: Contacts of Structural Units for 5BNH
  • Structure Factors (355 Kb)
  • Retrieve 5BNH in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5BNH from S2C, [Save to disk]
  • Re-refined 5bnh structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5BNH in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5BNH
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5bnh] [5bnh_B] [5bnh_A] [5bnh_D] [5bnh_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 5BNH: [HIRAN ] by SMART
    • Other resources with information on 5BNH
  • Community annotation for 5BNH at PDBWiki (http://pdbwiki.org)

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