5BTR	Hydrolase Substrate	date	Jun 03, 2015
title	Crystal Structure Of Sirt1 In Complex With Resveratrol And A Containing Peptide
authors	D.Cao, M.Wang, X.Qiu, D.Liu, H.Jiang, N.Yang, R.M.Xu
compound		source
Molecule: Nad-Dependent Protein Deacetylase Sirtuin-1 Chain: A, B, C Fragment: Unp Residues 143-512 And 641-665 Synonym: Hsirt1,Regulatory Protein Sir2 Homolog 1,Sir2-Like 1,Hsir2; Ec: 3.5.1.- Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Sirt1, Sir2l1 Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet-28a Smt3
Molecule: Amc-Containing Peptide Chain: D, E, F Engineered: Yes		Synthetic: Yes Organism_scientific: Synthetic Organism_taxid: 32630
symmetry	Space Group: P 41	R_factor 0.207 R_Free 0.252
crystal cell	length a length b length c angle alpha angle beta angle gamma 133.890 133.890 106.707 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	3.20 Å
ligand	ACE, FDL, STL, ZN	enzyme	Hydrolase E.C.3.5.1 BRENDA
Gene Ontology	Chain Function Process Component A, C, B
Primary reference	Structural basis for allosteric, substrate-dependent stimulation of SIRT1 activity by resveratrol., Cao D, Wang M, Qiu X, Liu D, Jiang H, Yang N, Xu RM, Genes Dev. 2015 Jun 15;29(12):1316-25. doi: 10.1101/gad.265462.115. PMID:26109052

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (185 Kb) [Save to disk] Biological Unit Coordinates (5btr.pdb1.gz) 64 Kb Biological Unit Coordinates (5btr.pdb2.gz) 64 Kb Biological Unit Coordinates (5btr.pdb3.gz) 58 Kb LPC: Ligand-Protein Contacts for 5BTR CSU: Contacts of Structural Units for 5BTR Structure Factors (458 Kb) Retrieve 5BTR in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5BTR from S2C, [Save to disk] Re-refined 5btr structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5BTR in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5BTR

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5btr] [5btr_E] [5btr_A] [5btr_D] [5btr_B] [5btr_C] [5btr_F] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 5BTR

Community annotation for 5BTR at PDBWiki (http://pdbwiki.org)

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---