5BUN Membrane Protein date Jun 04, 2015
title Crystal Structure Of An Antigenic Outer Membrane Protein St5 Salmonella Typhi
authors M.Yoshimura, P.Chuankhayan, C.C.Lin, N.C.Chen, M.C.Yang, H.K.Fun
compound source
Molecule: Outer Membrane Protein
Chain: A, B, C
Engineered: Yes
 Organism_scientific: Salmonella Enterica Subsp. Enterica Se Typhi;
Organism_taxid: 90370
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: I 4
R_factor 0.210 R_Free 0.275
crystal
cell
length a length b length c angle alpha angle beta angle gamma
246.847 246.847 65.676 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.98 Å
ligand BOG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, C, B


Primary referenceCrystal structure of an antigenic outer-membrane protein from Salmonella Typhi suggests a potential antigenic loop and an efflux mechanism., Guan HH, Yoshimura M, Chuankhayan P, Lin CC, Chen NC, Yang MC, Ismail A, Fun HK, Chen CJ, Sci Rep. 2015 Nov 13;5:16441. doi: 10.1038/srep16441. PMID:26563565
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (205 Kb) [Save to disk]
  • Biological Unit Coordinates (5bun.pdb1.gz) 199 Kb
  • LPC: Ligand-Protein Contacts for 5BUN
  • CSU: Contacts of Structural Units for 5BUN
  • Structure Factors (750 Kb)
  • Retrieve 5BUN in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5BUN from S2C, [Save to disk]
  • Re-refined 5bun structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5BUN in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5BUN
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5bun_A] [5bun_C] [5bun_B] [5bun]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5BUN
  • Community annotation for 5BUN at PDBWiki (http://pdbwiki.org)

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