5BXB Protein Binding date Jun 08, 2015
title Crystal Structure Of Pentameric Kctd1 Btb Domain Form 1
authors A.X.Ji, A.Chu, G.G.Prive
compound source
Molecule: Btbpoz Domain-Containing Protein Kctd1
Chain: A, B, C, D, E, F, G, H, I, J
Fragment: Residues 29-132
Synonym: Potassium Channel Tetramerization Domain-Containin 1;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Kctd1, C18orf5
Expression_system: Escherichia Coli
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_variant: Codon+
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pmcsg7
symmetry Space Group: P 1 21 1
R_factor 0.191 R_Free 0.229
crystal
cell
length a length b length c angle alpha angle beta angle gamma
66.885 83.055 94.763 90.00 90.10 90.00
method X-Ray Diffractionresolution 2.17 Å
Gene
Ontology
ChainFunctionProcessComponent
F, A, J, E, B, H, C, D, I, G


Primary referenceStructural insights into KCTD protein assembly and Cullin3 recognition., Ji AX, Chu A, Nielsen TK, Benlekbir S, Rubinstein JL, Prive GG, J Mol Biol. 2015 Aug 31. pii: S0022-2836(15)00484-2. doi:, 10.1016/j.jmb.2015.08.019. PMID:26334369
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (364 Kb) [Save to disk]
  • Biological Unit Coordinates (5bxb.pdb1.gz) 180 Kb
  • Biological Unit Coordinates (5bxb.pdb2.gz) 182 Kb
  • CSU: Contacts of Structural Units for 5BXB
  • Structure Factors (939 Kb)
  • Retrieve 5BXB in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5BXB from S2C, [Save to disk]
  • Re-refined 5bxb structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5BXB in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5BXB
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5bxb_D] [5bxb_E] [5bxb_A] [5bxb_J] [5bxb_G] [5bxb] [5bxb_H] [5bxb_I] [5bxb_C] [5bxb_F] [5bxb_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 5BXB: [BTB ] by SMART
  • Other resources with information on 5BXB
  • Community annotation for 5BXB at PDBWiki (http://pdbwiki.org)

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science