5BZ2 Transport Protein date Jun 11, 2015
title Crystal Structure Of The Sodium Proton Antiporter Napa In In Facing Conformation
authors M.Coincon, P.Uzdavinys, A.Cameron, D.Drew
compound source
Molecule: Na(+)H(+) Antiporter
Chain: A
Engineered: Yes
Mutation: Yes
 Organism_scientific: Thermus Thermophilus
Organism_taxid: 274
Gene: Tt_c1108
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_variant: Lemo21
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pwaldogfpe
symmetry Space Group: C 2 2 21
R_factor 0.290 R_Free 0.329
crystal
cell
length a length b length c angle alpha angle beta angle gamma
77.710 84.640 201.780 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.70 Å
Gene TT
Gene
Ontology
ChainFunctionProcessComponent
A
  • solute:proton antiporter act...


    • Primary referenceCrystal structures reveal the molecular basis of ion translocation in sodium/proton antiporters., Coincon M, Uzdavinys P, Nji E, Dotson DL, Winkelmann I, Abdul-Hussein S, Cameron AD, Beckstein O, Drew D, Nat Struct Mol Biol. 2016 Feb 1. doi: 10.1038/nsmb.3164. PMID:26828964
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (177 Kb) [Save to disk]
  • Biological Unit Coordinates (5bz2.pdb1.gz) 345 Kb
  • CSU: Contacts of Structural Units for 5BZ2
  • Structure Factors (112 Kb)
  • Retrieve 5BZ2 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5BZ2 from S2C, [Save to disk]
  • Re-refined 5bz2 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5BZ2 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5BZ2
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5bz2] [5bz2_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5BZ2
  • Community annotation for 5BZ2 at PDBWiki (http://pdbwiki.org)

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