5C0D Immune System date Jun 12, 2015
title Hla-A02 Carrying Aqwgpdpaaa
authors P.J.Rizkallah, A.M.Bulek, D.K.Cole, A.K.Sewell
compound source
Molecule: Hla Class I Histocompatibility Antigen, A-2 Alpha
Chain: A
Fragment: Unp Residues 25-300
Synonym: Mhc Class I Antigen A2, Hla-A02 Heavy Chain
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Hla-A, Hlaa
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Beta-2-Microglobulin
Chain: B
Fragment: Unp Residues 21-119
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: B2m, Cdabp0092, Hdcma22p
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Marker Peptide
Chain: C
Engineered: Yes
Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
symmetry Space Group: P 1 21 1
R_factor 0.172 R_Free 0.214
crystal
cell
length a length b length c angle alpha angle beta angle gamma
52.840 81.150 56.190 90.00 112.32 90.00
method X-Ray Diffractionresolution 1.68 Å
Gene
Ontology
ChainFunctionProcessComponent
B
  • cellular response to iron io...

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  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (146 Kb) [Save to disk]
  • Biological Unit Coordinates (5c0d.pdb1.gz) 140 Kb
  • CSU: Contacts of Structural Units for 5C0D
  • Structure Factors (2615 Kb)
  • Retrieve 5C0D in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5C0D from S2C, [Save to disk]
  • Re-refined 5c0d structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
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    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5c0d] [5c0d_A] [5c0d_C] [5c0d_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 5C0D: [IGc1 ] by SMART
    • Other resources with information on 5C0D
  • Community annotation for 5C0D at PDBWiki (http://pdbwiki.org)

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