5C16 Hydrolase date Jun 13, 2015
title Myotubularin-Related Proetin 1
authors B.I.Lee, S.M.Bong
compound source
Molecule: Myotubularin-Related Protein 1
Chain: A, B, C, D
Fragment: Unp Residues 95-665
Synonym: Phosphatidylinositol-3-Phosphate Phosphatase
Ec: 3.1.3.64
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Mtmr1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Rosetta2 (De3)
Expression_system_plasmid: Modified Pet32 Vector
symmetry Space Group: P 1
R_factor 0.220 R_Free 0.274
crystal
cell
length a length b length c angle alpha angle beta angle gamma
67.219 96.587 97.581 87.60 86.07 77.33
method X-Ray Diffractionresolution 2.07 Å
ligand PO4 enzyme Hydrolase E.C.3.1.3.64 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (656 Kb) [Save to disk]
  • Biological Unit Coordinates (5c16.pdb1.gz) 165 Kb
  • Biological Unit Coordinates (5c16.pdb2.gz) 170 Kb
  • Biological Unit Coordinates (5c16.pdb3.gz) 167 Kb
  • Biological Unit Coordinates (5c16.pdb4.gz) 162 Kb
  • LPC: Ligand-Protein Contacts for 5C16
  • CSU: Contacts of Structural Units for 5C16
  • Structure Factors (1739 Kb)
  • Retrieve 5C16 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5C16 from S2C, [Save to disk]
  • Re-refined 5c16 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5C16 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5C16
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5c16] [5c16_D] [5c16_A] [5c16_B] [5c16_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 5C16: [GRAM] [PTPc_DSPc ] by SMART
  • Other resources with information on 5C16
  • Community annotation for 5C16 at PDBWiki (http://pdbwiki.org)

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science