5C1M Signaling Protein Antagonist date Jun 15, 2015
title Crystal Structure Of Active Mu-Opioid Receptor Bound To The Bu72
authors W.J.Huang, A.Manglik, A.J.Venkatakrishnan, T.Laeremans, E.N.Fein A.L.Sanborn, H.E.Kato, K.E.Livingston, T.S.Thorsen, R.Kling, S.G P.Gmeiner, S.M.Husbands, J.R.Traynor, W.I.Weis, J.Steyaert, R.O. B.K.Kobilka
compound source
Molecule: Mu-Type Opioid Receptor
Chain: A
Synonym: Mor-1
Engineered: Yes
Organism_scientific: Mus Musculus
Organism_common: Mouse
Organism_taxid: 10090
Gene: Oprm1, Mor, Oprm
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108

Molecule: Nanobody 39
Chain: B
Engineered: Yes

Organism_scientific: Lama Glama
Organism_taxid: 9844
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: I 21 21 21
R_factor 0.199 R_Free 0.229
crystal
cell
length a length b length c angle alpha angle beta angle gamma
44.430 144.000 209.900 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.07 Å
ligand CLR, OLC, P6G, PO4, VF1, YCM enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural insights into micro-opioid receptor activation., Huang W, Manglik A, Venkatakrishnan AJ, Laeremans T, Feinberg EN, Sanborn AL, Kato HE, Livingston KE, Thorsen TS, Kling RC, Granier S, Gmeiner P, Husbands SM, Traynor JR, Weis WI, Steyaert J, Dror RO, Kobilka BK, Nature. 2015 Aug 5. doi: 10.1038/nature14886. PMID:26245379
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (150 Kb) [Save to disk]
  • Biological Unit Coordinates (5c1m.pdb1.gz) 142 Kb
  • LPC: Ligand-Protein Contacts for 5C1M
  • CSU: Contacts of Structural Units for 5C1M
  • Structure Factors (865 Kb)
  • Retrieve 5C1M in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5C1M from S2C, [Save to disk]
  • Re-refined 5c1m structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5C1M in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5C1M
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5c1m_B] [5c1m] [5c1m_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 5C1M: [IGv ] by SMART
  • Other resources with information on 5C1M
  • Community annotation for 5C1M at PDBWiki (http://pdbwiki.org)

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